Incaroo
Tax & Compliance
15 min read

Business Entity Taxes: LLC vs Sole Proprietorship vs S-Corp

A comprehensive guide to understanding what you'll actually pay in taxes for each business structure—and when forming an LLC or corporation with professional services can provide both liability protection and tax advantages.
Michael Chen, CPA
October 6, 2025

The Fundamental Tax Reality

Here's the tax truth that surprises most new business owners: an LLC taxed as a sole proprietorship pays exactly the same federal taxes as a sole proprietorship. The LLC structure itself doesn't change your tax obligations—it's all about how the IRS classifies your business for tax purposes.

The real tax advantages come from two things:

  • Liability protection (LLC advantage)

    Your personal assets are protected from business debts and lawsuits

  • S-Corp election option (LLC advantage)

    Can reduce self-employment tax by 50% or more on profits above a reasonable salary


Tax Comparison Table

Here's how the three main options stack up for a business with $100,000 in annual profit:

Tax Aspect

Sole Proprietorship

LLC (Default Tax)

LLC (S‑Corp Election)

Federal Income TaxPersonal return (Schedule C)Personal return (Schedule C)Pass-through (K-1 distribution)
Self-Employment Tax
(Social Security & Medicare)
15.3% on full $100K profit
$15,300 total
15.3% on full $100K profit
$15,300 total
15.3% on $50K salary only
$7,650 total (50% savings)
Payroll RequirementsNoneNoneQuarterly payroll taxes
W-2 for yourself
Administrative ComplexityVery LowVery LowMedium (payroll setup required)
Total Tax Savings vs Sole Prop$0$0

$7,650 annually


Self-Employment Tax: The Hidden Tax Burden

Self-employment tax is where most business owners get hit hardest. This 15.3% tax covers both the employee and employer portions of Social Security (12.4%) and Medicare (2.9%) taxes that traditional employees don't pay directly.

What Self-Employment Tax Covers
  • Social Security Tax (12.4%)

    Provides retirement and disability benefits (up to $168,600 income in 2025)

  • Medicare Tax (2.9%)

    Healthcare benefits (no income limit)

  • Additional Medicare Tax (0.9%)

    Applies to income over $200,000 (single) or $250,000 (married filing jointly)

Self-Employment Tax Deduction

The good news: You can deduct half of your self-employment tax as an adjustment to income on your personal tax return. For the $100,000 profit example above, you'd deduct $7,650, effectively reducing your taxable income.


When S-Corp Election Makes Sense

The S-Corp election is a tax strategy where you become an employee of your own business. You pay yourself a "reasonable salary" and treat the remaining profits as distributions (which aren't subject to self-employment tax).

S-Corp Election Requirements
  • File Form 2553 within 75 days of formation

    Or by March 15 of the following year for existing LLCs

  • Pay yourself a reasonable salary

    Must be comparable to what you'd pay someone else for your role

  • File quarterly payroll tax returns

    Form 941 for federal taxes, plus state unemployment taxes

  • Issue yourself a W-2

    For the salary portion (distributions reported on Schedule K-1)

S-Corp Tax Savings Calculation

Scenario

Annual Profit

Self-Employment Tax

Annual Savings

Sole Proprietorship$100,000$15,300$0
S-Corp (50/50 split)$100,000$7,650

$7,650

S-Corp (60/40 split)$100,000$9,180

$6,120

When S-Corp Election is Worth It

The S-Corp election typically makes financial sense when your business profit exceeds $50,000-$60,000 annually. Below that threshold, the administrative complexity and payroll setup costs often outweigh the tax savings.


State Tax Considerations

While federal taxes are identical for sole proprietorships and LLCs taxed as sole proprietorships, state taxes can vary significantly. Here's what you need to know:

State Income Tax Treatment

Most states follow the federal tax treatment—meaning LLCs taxed as sole proprietorships are treated the same as sole proprietorships for state income tax purposes. However, some states have their own rules:

  • California: LLC fee instead of income tax

    LLCs pay an $800 annual LLC fee plus income-based fees, regardless of federal tax treatment

  • Texas: Franchise tax for most businesses

    LLCs and corporations pay Texas franchise tax; sole proprietorships may be exempt

  • Nevada: No state income tax

    All business types benefit from Nevada's business-friendly tax environment

Sales Tax Collection

Both sole proprietorships and LLCs must collect and remit sales tax on taxable sales. The business structure doesn't affect sales tax obligations—it's based on what you sell and where you sell it.


Quarterly Estimated Tax Payments

Both sole proprietorships and LLCs (taxed as sole proprietorships) must make quarterly estimated tax payments if they expect to owe $1,000 or more in taxes for the year. This includes:

  • Federal income tax

    Based on your expected annual income and deductions

  • Self-employment tax

    15.3% of net profit (after the 50% deduction)

  • State income tax (if applicable)

    Varies by state; use state worksheets to calculate


Record Keeping and Tax Deductions

Good record keeping is crucial for both business structures. The IRS requires you to keep records that support your income, expenses, and deductions for at least 3 years (6 years if you underreport income by more than 25%).

Common Tax Deductions for Both Structures
  • Home office deduction

    If you work from home, deduct a portion of rent/mortgage, utilities, and internet

  • Business use of vehicle

    Mileage (67¢ per mile in 2025) or actual expenses

  • Equipment and supplies

    Computers, software, office supplies, and business-related purchases

  • Marketing and advertising

    Website costs, business cards, online ads, and promotional expenses

  • Professional services

    Legal fees, accounting fees, and business formation costs

LLC-Specific Deductions
  • LLC formation costs

    Legal fees, filing fees, and organizational expenses (can amortize over 15 years)

  • Registered agent fees

    Annual registered agent service fees are deductible

  • Operating agreement

    Legal fees for drafting your operating agreement


Making the Right Choice for Your Situation

The choice between sole proprietorship and LLC depends on your specific business situation, risk tolerance, and growth plans. Here's a decision framework:

Choose Sole Proprietorship If:

• You're just testing a business idea and want maximum simplicity

• Your business has minimal liability risk (consulting, freelance work)

• You want to avoid any additional paperwork or fees

• Your personal assets are already protected through other means

• You don't anticipate significant business growth in the near term

Choose LLC If:

• You want personal liability protection for your business activities

• You might want to elect S-Corp status later for tax savings

• Your business involves any physical products or services with liability risk

• You want to project a more professional image to clients and vendors

• You're planning for business growth and want flexibility in ownership structure

Get Free Business Formation Today

Form your business (LLC, S-Corp, or C-Corp) completely free - pay only state filing fees with no service charges. Add professional registered agent service ($99/year) for compliance reminders, privacy protection, and expert support.

Start Your Free Business FormationCompare All Entity Types
Related Articles
LLC vs Corporation vs S‑Corporation: Complete Guide

Detailed comparison of all business entity types and their tax implications.

LLC Operating Agreement Requirements by State

Learn about operating agreement requirements and get professional help with drafting.